Typical 2D Structure
Alanine



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D-Loop V-Region T-Loop
Display 2D Consensus Structure
Display Statistical distribution of nucleotides
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Total number of organisms : 34



Statistical distribution of nucleotides (%)

5' Acceptor sterm (nt 1)
A
C
G
T
44,12
0
55,88
0
88,24
0
11,76
0
2,94
0
97,06
0
0
0
100
0
38,24
0
52,94
8,82
0
67,65
0
32,35
0
0
0
100
Connector 1 (nt 8)
A
C
G
T
0
0
0
100
100
0
0
0
5' D-stern (nt 10)
A
C
G
T
0
0
100
0
0
97,06
0
2,94
0
0
0
100
0
0
0
100
D-loop (nt 14)
A
C
G
T
100
0
0
0
100
0
0
0
0
2,94
8,82
88,24
2,94
0
2,94
94,12
2,94
0
0
8,82
100
0
0
0
3' D-stern (nt 22)
A
C
G
T
100
0
0
0
100
0
0
0
0
0
100
0
0
32,35
0
67,65
Connector 2 (nt 26)
A
C
G
T
38,24
0
61,76
0
5' Anticodon stern (nt 27)
A
C
G
T
38,24
5,88
38,24
17,65
2,94
44,12
0
52,94
0
0
0
100
2,94
0
97,06
0
79,41
0
20,59
0
Anticodon loop (nt 32)
A
C
G
T
0
0
5,88
94,12
0
0
0
100
0
0
0
100
0
0
100
0
0
100
0
0
38,24
0
61,76
0
2,94
5,88
2,94
88,24
5' Anticodon stern (nt 39)
A
C
G
T
0
8,82
0
91,18
0
94,12
0
5,88
97,06
0
2,94
0
26,47
0
67,65
5,88
5,88
2,94
11,76
79,41
Variable region (nt 44)
A
C
G
T
32,35
0
0
67,65
0
0
100
0
100
0
0
0
0
0
0
100
5' T-stern (nt 49)
A
C
G
T
0
0
100
0
0
50
0
50
85,29
0
14,71
0
50
0
50
0
50
0
50
0
T-loop (nt 54)
A
C
G
T
35,29
0
64,71
0
5,88
5,88
2,94
85,29
35,29
2,94
44,12
17,65
35,29
0
47,06
17,65
47,06
0
44,12
8,82
11,76
2,94
47,06
32,35
0
0
5,88
0
8,82
8,82
14,71
67,65
5' T-stern (nt 61)
A
C
G
T
0
47,06
0
52,94
0
8,82
0
91,18
0
2,94
0
97,06
14,71
0
85,29
0
0
91,18
0
8,82
3' Accepter sterm (nt 66)
A
C
G
T
100
0
0
0
11,76
0
88,24
0
0
8,82
0
91,18
0
97,06
0
2,94
0
97,06
0
2,94
0
0
0
100
0
0
0
100
Discriminator base (nt 73)
A
C
G
T
97,06
0
2,94
0

Base pairing : Watson Crick (WC), G-T and MisMatch (Mis)
WC (%)GT (%)Mis (%)
44,1255,880
88,2411,760
10000
97,062,940
47,0644,128,82
79,4120,590
10000
WC (%)GT (%)Mis (%)
32,3567,650
97,062,940
10000
10000
WC (%)GT (%)Mis (%)
47,0641,1811,76
73,5323,532,94
97,062,940
97,062,940
88,2411,760
WC (%)GT (%)Mis (%)
91,188,820
64,7135,290
88,2411,760
58,8241,180
97,062,940

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