Typical 2D Structure
Alanine



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D-Loop V-Region T-Loop
Display 2D Consensus Structure
Display Statistical distribution of nucleotides
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Total number of organisms : 5



Statistical distribution of nucleotides (%)

5' Acceptor sterm (nt 1)
A
C
G
T
40
0
60
0
100
0
0
0
0
0
100
0
0
0
100
0
0
0
100
0
0
60
0
40
0
0
0
100
Connector 1 (nt 8)
A
C
G
T
0
0
0
100
100
0
0
0
5' D-stern (nt 10)
A
C
G
T
0
0
100
0
0
100
0
0
0
0
0
100
0
0
0
100
D-loop (nt 14)
A
C
G
T
100
0
0
0
100
0
0
0
0
0
0
100
20
0
20
60
100
0
0
0
3' D-stern (nt 22)
A
C
G
T
100
0
0
0
100
0
0
0
0
0
100
0
20
0
0
80
Connector 2 (nt 26)
A
C
G
T
0
0
100
0
5' Anticodon stern (nt 27)
A
C
G
T
0
20
0
80
0
0
0
100
0
0
0
100
0
0
100
0
100
0
0
0
Anticodon loop (nt 32)
A
C
G
T
0
0
0
100
0
0
0
100
0
0
0
100
0
0
100
0
0
100
0
0
40
0
60
0
0
0
0
100
5' Anticodon stern (nt 39)
A
C
G
T
0
0
0
100
0
100
0
0
100
0
0
0
80
0
20
0
0
0
0
100
Variable region (nt 44)
A
C
G
T
0
0
0
100
0
0
100
0
100
0
0
0
0
0
0
100
5' T-stern (nt 49)
A
C
G
T
0
0
100
0
0
0
0
100
60
0
40
0
80
0
20
0
0
0
100
0
T-loop (nt 54)
A
C
G
T
80
0
20
0
0
0
0
100
100
0
0
0
0
0
80
20
100
0
0
0
20
0
80
0
0
0
0
100
5' T-stern (nt 61)
A
C
G
T
0
100
0
0
0
0
0
100
0
20
0
80
0
0
100
0
0
100
0
0
3' Accepter sterm (nt 66)
A
C
G
T
100
0
0
0
0
0
100
0
0
60
0
40
0
100
0
0
0
100
0
0
0
0
0
100
0
0
0
100
Discriminator base (nt 73)
A
C
G
T
100
0
0
0

Base pairing : Watson Crick (WC), G-T and MisMatch (Mis)
WC (%)GT (%)Mis (%)
40600
10000
10000
10000
60400
60400
10000
WC (%)GT (%)Mis (%)
08020
10000
10000
10000
WC (%)GT (%)Mis (%)
00100
80200
10000
10000
10000
WC (%)GT (%)Mis (%)
10000
01000
80200
80200
10000

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